stack.basicstack.de/infrastructure/k3s-manifests/README-DEV-527.md
CTO Agent 1c3cd31381 fix(dns): cap hostNetwork/coredns pod DNS at 3 upstreams (DEV-527)
Hetzner OS publishes 4 systemd-resolved upstreams and Kubernetes limits
pod resolv.conf to 3 nameservers, so kubelet drops the 4th and fires a
DNSConfigForming Warning event on every hostNetwork or dnsPolicy=Default
pod restart. Silence the noise by pinning the pods to 3 explicit servers
(same 3 kubelet was already picking).

- apps/observability/patches/node-exporter-dns-config.yaml — strategic-
  merge patch adding dnsPolicy=None + dnsConfig to the
  kube-prometheus-stack node-exporter DaemonSet (Helm-managed, applied
  by hand)
- apps/observability/patches/coredns-dns-config.yaml — companion patch
  for the k3s built-in CoreDNS Deployment. kubectl patch alone is not
  durable because the k3s addon controller reverts dnsPolicy; kept as a
  quick manual re-apply hook
- infrastructure/k3s-manifests/coredns.yaml — the authoritative modified
  k3s addon manifest that must live at
  /var/lib/rancher/k3s/server/manifests/coredns.yaml on all 3 CP nodes
- infrastructure/k3s-manifests/README-DEV-527.md — apply procedure,
  verification steps, and upgrade caveat

Applied and verified on the live cluster:
- node-exporter DaemonSet rolled with dnsPolicy=None; no
  DNSConfigForming events on current pods
- coredns Deployment reconciled after pushing the modified manifest to
  all 3 CPs; new pod runs with dnsPolicy=None and 3-nameserver dnsConfig
- internal + external DNS resolution still works

Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-08-23 12:05:12 +00:00

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3.9 KiB
Markdown

# k3s CoreDNS manifest override (DEV-527)
## Context
The k3s server bundles a stock CoreDNS Deployment and reconciles it
via the k3s addon controller. The manifest source is
`/var/lib/rancher/k3s/server/manifests/coredns.yaml` on each control
plane node. Any `kubectl patch` on the `kube-system/coredns`
Deployment that touches a field the source manifest declares is
reverted by the addon controller.
Hetzner Cloud nodes publish four systemd-resolved DNS upstreams:
```
2a01:4ff:ff00::add:2
2a01:4ff:ff00::add:1
185.12.64.1
185.12.64.2
```
Kubernetes limits pod `resolv.conf` to three nameservers, so kubelet
drops one entry and fires a `DNSConfigForming` Warning event every
time a pod using `dnsPolicy: Default` (or a `hostNetwork` pod that
coerces `ClusterFirst` to `Default`) is created. The stock CoreDNS
Deployment uses `dnsPolicy: Default`, so the warning fires on every
CoreDNS pod restart.
## Fix
The authoritative fix is to modify the source manifest so
CoreDNS runs with an explicit three-nameserver `dnsConfig` and
`dnsPolicy: None`. The three servers match what kubelet was already
picking (both Hetzner IPv6 anycast entries plus the first IPv4
entry), so CoreDNS's `forward . /etc/resolv.conf` upstreams are
unchanged; only the noisy Warning event is silenced.
The `coredns.yaml` file in this directory is the modified manifest
that must live at `/var/lib/rancher/k3s/server/manifests/coredns.yaml`
on **all three** k3s control plane nodes
(`k3s-cp-1`, `k3s-cp-2`, `k3s-cp-3`).
## Apply / re-apply procedure
Run from any host with SSH access to the CPs:
```bash
TS="$(date -u +%Y%m%dT%H%M%SZ)"
for IP in 178.105.17.239 188.245.85.199 49.13.92.162; do
echo "== $IP =="
scp infrastructure/k3s-manifests/coredns.yaml \
root@$IP:/tmp/coredns.yaml.new
ssh root@$IP "\
cp -a /var/lib/rancher/k3s/server/manifests/coredns.yaml \
/var/lib/rancher/k3s/server/manifests/coredns.yaml.bak-\$(date -u +%Y%m%dT%H%M%SZ) && \
install -m 0600 -o root -g root /tmp/coredns.yaml.new \
/var/lib/rancher/k3s/server/manifests/coredns.yaml && \
rm /tmp/coredns.yaml.new && \
sha256sum /var/lib/rancher/k3s/server/manifests/coredns.yaml"
done
kubectl -n kube-system rollout status deployment coredns --timeout=120s
```
The k3s addon controller detects the file's checksum change and
re-applies the Deployment; the rolling update replaces the CoreDNS
pod with the new spec.
## Verification
```bash
kubectl get deploy -n kube-system coredns \
-o jsonpath='{.spec.template.spec.dnsPolicy}{"\n"}{.spec.template.spec.dnsConfig}{"\n"}'
# Expect: dnsPolicy=None + dnsConfig with 3 nameservers.
# No DNSConfigForming event on the current CoreDNS pod:
POD=$(kubectl get pods -n kube-system -l k8s-app=kube-dns -o jsonpath='{.items[0].metadata.name}')
kubectl get events -n kube-system \
--field-selector involvedObject.name=$POD,reason=DNSConfigForming
# Expect: No resources found.
# Cluster DNS still resolves internal + external:
kubectl run dns-test --restart=Never --image=busybox:1.36 --rm=false --command -- \
sh -c "nslookup kubernetes.default.svc.cluster.local && nslookup forgejo.basicstack.de && echo OK"
kubectl logs dns-test | tail -20
kubectl delete pod dns-test
```
## Upgrade caveat
When the k3s server binary is upgraded to a version that ships a new
CoreDNS manifest (new CoreDNS image, new resource limits, new probes,
etc.), the upgrade will **not** overwrite this file — k3s only creates
the file if it does not exist. Instead, k3s emits an event/log noting
that the on-disk manifest differs from the bundled default. On such an
upgrade, diff the bundled manifest against this one, fold the upstream
changes in, and re-apply.
## Related
- Companion strategic-merge patch:
`apps/observability/patches/coredns-dns-config.yaml`
- Companion node-exporter patch:
`apps/observability/patches/node-exporter-dns-config.yaml`
- Parent issue: `DEV-525` (Kubernetes events)
- Sibling k3s coredns.yaml edit: `DEV-526` (clusterIP change)